The following papers piqued my interest this week. Hopefully, I will have time to take a closer look at them all and decide which ones warrant a thumbs up and which ones a thumbs down. Some I found through my Biomed News search of the proteomics and disease list, some through social media, and some through table of contents alerts. Some of the articles are published in journals that I know well; others are in journals that are new to me. One is a press release from a biotech company. One is an old paper from 2018 that grabbed my attention.
28 March 2019
Cell Death Dis. 2019 Mar 15;10(4):251. doi: 10.1038/s41419-019-1472-x. AID modulates carcinogenesis network via DNA demethylation in bladder urothelial cell carcinoma. https://www.ncbi.nlm.nih.gov/pubmed/30874539
Nat Commun. 2019 Mar 12;10(1):1092. doi: 10.1038/s41467-019-08794-x. Dynamic molecular changes during the first week of human life follow a robust developmental trajectory. https://www.ncbi.nlm.nih.gov/pubmed/30862783
Cell 2019 Mar 28
https://doi.org/10.1016/j.cell.2019.02.036. Steroid Hormone Function Controls Non-competitive Plasmodium Development in Anopheles. https://www.cell.com/cell/fulltext/S0092-8674(19)30219-3
Proteomics. 2019 Mar 13:e1800448. doi: 10.1002/pmic.201800448. Proteomic analysis of stromal and epithelial cell communications in human endometrial cancer using a unique 3D co-culture model.
https://www.ncbi.nlm.nih.gov/pubmed/30865368
Sci Rep. 2019 Mar 15;9(1):4647. doi: 10.1038/s41598-019-39571-x. Definition of a cell surface signature for human cardiac progenitor cells after comprehensive comparative transcriptomic and proteomic characterization. https://www.ncbi.nlm.nih.gov/pubmed/30874584
Nature Reviews Cancer 2019; 19: 215–227. Host tissue determinants of tumour immunity https://www.nature.com/articles/s41568-019-0125-9
J Neurol Neurosurg Psychiatry. 2019 Mar 13. pii: jnnp-2018-320151. doi: 10.1136/jnnp-2018-320151. Proximity extension assay testing reveals novel diagnostic biomarkers of atypical parkinsonian syndromes.
https://www.ncbi.nlm.nih.gov/pubmed/30867224
Redox Biol. 2019 Apr;22:101142. doi: 10.1016/j.redox.2019.101142. Protein disulfide isomerase plasma levels in healthy humans reveal proteomic signatures involved in contrasting endothelial phenotypes.
https://www.ncbi.nlm.nih.gov/pubmed/30870787
Biomed Pharmacother. 2019 Mar 12;113:108763. doi: 10.1016/j.biopha.2019.108763. Inflammatory effects of in vivo glycated albumin from cardiovascular patients.
https://www.ncbi.nlm.nih.gov/pubmed/30875658
Methods Mol Biol. 2019;1955:363-380. doi: 10.1007/978-1-4939-9148-8_27. Fluorescence Proteomic Technology to Analyze Peripheral Blood Mononuclear Cells in Chronic Chagas Disease.
https://www.ncbi.nlm.nih.gov/pubmed/30868541
Science 2019 Mar 29; 363 (6434): 1456-1459. doi: 10.1126/science.aaw0046 Optogenetic manipulation of stomatal kinetics improves carbon assimilation, water use, and growth. http://science.sciencemag.org/content/363/6434/1456
J Extracell Vesicles. 2019 Mar 5;8(1):1585163. doi: 10.1080/20013078.2019.1585163. Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles.
https://www.ncbi.nlm.nih.gov/pubmed/30863515
Sci Transl Med 2019 Mar 27; 11 (485): eaau6934. doi: 10.1126/scitranslmed.aau6934. Bioengineered human acellular vessels recellularize and evolve into living blood vessels after human implantation. https://pubmed.ncbi.nlm.nih.gov/30918113
Int J Mol Sci. 2019 Mar 13;20(6). pii: E1265. doi: 10.3390/ijms20061265. Integrated Lipidomics and Metabolomics Analysis of Tears in Multiple Sclerosis: An Insight into Diagnostic Potential of Lacrimal Fluid.
https://www.ncbi.nlm.nih.gov/pubmed/30871169
Redox Biol. 2019 Mar 9:101162. doi: 10.1016/j.redox.2019.101162. Restoration of aberrant mTOR signaling by intranasal rapamycin reduces oxidative damage: Focus on HNE-modified proteins in a mouse model of down syndrome. https://www.ncbi.nlm.nih.gov/pubmed/30876754
PLoS One. 2019 Mar 14;14(3):e0213400. doi: 10.1371/journal.pone.0213400. A potential new approach for treating systemic sclerosis: Dedifferentiation of SSc fibroblasts and change in the microenvironment by blocking store-operated Ca2+ entry. https://www.ncbi.nlm.nih.gov/pubmed/30870448
Theranostics. 2019 Jan 30;9(4):1181-1199. doi: 10.7150/thno.29093. Resistance to lysosomotropic drugs used to treat kidney and breast cancers involves autophagy and inflammation and converges in inducing CXCL5.
https://www.ncbi.nlm.nih.gov/pubmed/30867824
http://www.thno.org/v09p1181.htm
Cell Rep. 2019 Mar 12;26(11):3100-3115.e7. doi: 10.1016/j.celrep.2019.02.038. An Integrated Global Analysis of Compartmentalized HRAS Signaling.
https://www.ncbi.nlm.nih.gov/pubmed/30865897
Acta Biomater. 2019 Mar 8. pii: S1742-7061(19)30178-3. doi: 10.1016/j.actbio.2019.03.012. Bone extracts immunomodulate and enhance the regenerative performance of dicalcium phosphates bioceramics. https://www.ncbi.nlm.nih.gov/pubmed/30853609
Neurosci Res. 2019 Mar 9. pii: S0168-0102(18)30722-3. doi: 10.1016/j.neures.2019.02.006. A methodology for discovering novel brain-relevant peptides: Combination of ribosome profiling and peptidomics. https://www.ncbi.nlm.nih.gov/pubmed/30862443
Methods Mol Biol. 2019;1959:113-122. doi: 10.1007/978-1-4939-9164-8_7. Lys-C/Trypsin Tandem-Digestion Protocol for Gel-Free Proteomic Analysis of Colon Biopsies. https://www.ncbi.nlm.nih.gov/pubmed/30852818
Methods Mol Biol. 2019;1959:123-127. doi: 10.1007/978-1-4939-9164-8_8. Tube-Gel: A Fast and Effective Sample Preparation Method for High-Throughput Quantitative Proteomics. https://www.ncbi.nlm.nih.gov/pubmed/30852819
Int J Mol Sci. 2019 Mar 7;20(5). pii: E1172. doi: 10.3390/ijms20051172. A novel Microproteomic Approach Using Laser Capture Microdissection to Study Cellular Protrusions. https://www.ncbi.nlm.nih.gov/pubmed/30866487
Methods Mol Biol. 2019;1959:275-289. doi: 10.1007/978-1-4939-9164-8_18. Designing an In Silico Strategy to Select Tissue-Leakage Biomarkers Using the Galaxy Framework. https://www.ncbi.nlm.nih.gov/pubmed/30852829
Anal Bioanal Chem. 2019 Mar 11. doi: 10.1007/s00216-019-01694-5. Fluorescence imaging-based methods for single-cell protein analysis. https://www.ncbi.nlm.nih.gov/pubmed/30854595
PLoS One. 2019 Mar 15;14(3):e0213469. doi: 10.1371/journal.pone.0213469. Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics.
https://www.ncbi.nlm.nih.gov/pubmed/30875365
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0213469
J Proteome Res. 2019 Mar 21. doi: 10.1021/acs.jproteome.8b00942. Identification of the Direct Substrates of the ABL Kinase via Kinase Assay Linked Phosphoproteomics with Multiple Drug Treatments.
https://www.ncbi.nlm.nih.gov/pubmed/30869898
Cancer Treat Res Commun. 2019 Feb 26;19:100126. doi: 10.1016/j.ctarc.2019.100126. Phase II study of stereotactic radiosurgery for the treatment of patients with oligoprogression on erlotinib.
https://www.ncbi.nlm.nih.gov/pubmed/30852467
Onco Targets Ther. 2019 Feb 22;12:1521-1538. doi: 10.2147/OTT.S188296. Development of treatment options for Chinese patients with advanced squamous cell lung cancer: focus on afatinib.
https://www.ncbi.nlm.nih.gov/pubmed/30863118
Int J Biol Markers. 2019 Mar 11:1724600818817316. doi: 10.1177/1724600818817316. The metabolomic scent of cancer disease progression in soft tissue sarcoma: A case report.
https://www.ncbi.nlm.nih.gov/pubmed/30852948
https://journals.sagepub.com/doi/full/10.1177/1724600818817316
Nature. 2019 Mar 13. doi: 10.1038/s41586-019-1019-4. Glucocorticoids promote breast cancer metastasis.
https://www.ncbi.nlm.nih.gov/pubmed/30867597
J Biol Chem. 2019 Mar 14. pii: jbc.RA118.005411. doi: 10.1074/jbc.RA118.005411. Ethanol sensitizes skeletal muscle to ammonia-induced molecular perturbations.
https://www.ncbi.nlm.nih.gov/pubmed/30872403 https://www.jbc.org/article/S0021-9258(20)36802-2/fulltext
BMC Bioinformatics. 2019 Mar 12;20(1):123. doi: 10.1186/s12859-019-2713-9. PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome.
https://www.ncbi.nlm.nih.gov/pubmed/30871454
May 2018
Biomicrofluidics. 2018 May 3;12(3):031101. doi: 10.1063/1.5032170. ELIPatch, a thumbnail-size patch with immunospot array for multiplexed protein detection from human skin surface.
https://www.ncbi.nlm.nih.gov/pubmed/30867857
https://aip.scitation.org/doi/10.1063/1.5032170
Press Release
Gilead and Galapagos Announce Filgotinib Meets Primary and Key Secondary Endpoints in the Phase 3 FINCH 1 Rheumatoid Arthritis Study http://investors.gilead.com/news-releases/news-release-details/gilead-and-galapagos-announce-filgotinib-meets-primary-and-key
Cover image details and credit: Freepik from www.flaticon.com is licensed by CC 3.0 BY
Cite as: N. R. Gough, Worth a closer look: March 2019. BioSerendipity (3 May 2019).
https://www.bioserendipity.com/worth-a-closer-look-28-march-2019/