As I was selecting the articles related to proteomics and disease, I kept a running list of those that piqued my interest. These range in topic and are not all related to proteomics. Most are related to medicine or human disease. Hopefully, I will have time to take a closer look at them all and decide which ones warrant a thumbs up and which ones a thumbs down. The only criteria used was if the title or abstract looked interesting. I did not limit my selections to those published in journals that I recognized or knew by reputation. One is an old paper that showed in my list for an unknown reason.
28 April 2019
Genomics Proteomics Bioinformatics. 2019 Feb;17(1):26-38. doi: 10.1016/j.gpb.2019.01.002. Epub 2019 Apr 23. Correlation of Gut Microbiome Between ASD Children and Mothers and Potential Biomarkers for Risk Assessment. https://www.ncbi.nlm.nih.gov/pubmed/31026579
J Proteomics. 2019 Jun 15;201:93-103. doi: 10.1016/j.jprot.2019.04.009. Metaproteomics of fecal samples of Crohn’s disease and Ulcerative Colitis.
https://www.ncbi.nlm.nih.gov/pubmed/31009805
NPJ Regen Med. 2019 Apr 16;4:8. doi: 10.1038/s41536-019-0070-y. Proteomic analysis of human mesenchymal stromal cell secretomes: a systematic comparison of the angiogenic potential. https://www.ncbi.nlm.nih.gov/pubmed/31016031
Nat Biomed Eng. 2017 Oct;1(10):796-806. doi: 10.1038/s41551-017-0139-0. Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity. https://www.ncbi.nlm.nih.gov/pubmed/31015588
Int J Cancer. 2019 Apr 22. doi: 10.1002/ijc.32356. Non-invasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures – Gender matters. https://www.ncbi.nlm.nih.gov/pubmed/31008534
Proteomics Clin Appl. 2019 Apr 24:e1800152. doi: 10.1002/prca.201800152 Evaluation of Urinary Proteome Library Generation Methods on Data-Independent Acquisition MS Analysis and its Application in Normal Urinary Proteome Analysis. https://www.ncbi.nlm.nih.gov/pubmed/31017348
J Funct Biomater. 2019 Apr 25;10(2). pii: E18. doi: 10.3390/jfb10020018. Adsorption of Proteins on m-CPPD and Urate Crystals Inhibits Crystal-induced Cell Responses: Study on Albumin-crystal Interaction. https://www.ncbi.nlm.nih.gov/pubmed/31027151
Mol Neuropsychiatry. 2019 Mar;5(1):52-59. doi: 10.1159/000492331. Epub 2018 Oct 10. X-Aptamer Technology Identifies C4A and ApoB in Blood as Potential Markers for Schizophrenia. https://www.ncbi.nlm.nih.gov/pubmed/31019918
Transl Psychiatry. 2019 Apr 22;9(1):126. doi: 10.1038/s41398-019-0461-2. Proteomic analysis of lymphoblastoid cell lines from schizophrenic patients.
https://www.ncbi.nlm.nih.gov/pubmed/31011151
Mol Neuropsychiatry. 2019 Mar;5(1):42-51. doi: 10.1159/000493425. Ketamine’s Effects on the Glutamatergic and GABAergic Systems: A Proteomics and Metabolomics Study in Mice. https://www.ncbi.nlm.nih.gov/pubmed/31019917
Clin Pharmacol Ther. 2019 Apr 23. doi: 10.1002/cpt.1482. Pharmacogenomics-Driven Prediction of Antidepressant Treatment Outcomes: A Machine Learning Approach with Multi-Trial Replication. https://www.ncbi.nlm.nih.gov/pubmed/31012492
J Neurotrauma. 2019 Apr 24. doi: 10.1089/neu.2018.6320. Monitoring of Protein Biomarkers of Inflammation in Human Traumatic Brain Injury Using Microdialysis and Proximity Extension Assay Technology in Neurointensive Care. https://www.ncbi.nlm.nih.gov/pubmed/31017044
Front Immunol. 2019 Apr 10;10:540. doi: 10.3389/fimmu.2019.00540. Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis. https://www.ncbi.nlm.nih.gov/pubmed/31024521
JAMA Neurol. 2019 Apr 22. doi: 10.1001/jamaneurol.2019.0834. Association of Cortical β-Amyloid Protein in the Absence of Insoluble Deposits With Alzheimer Disease. https://www.ncbi.nlm.nih.gov/pubmed/31009033
Environ Pollut. 2019 Apr 17;250:407-415. doi: 10.1016/j.envpol.2019.04.088. First evidence of protein modulation by polystyrene microplastics in a freshwater biological model. https://www.ncbi.nlm.nih.gov/pubmed/31022646
Arthrosc Tech. 2019 Feb 25;8(3):e335-e341. doi: 10.1016/j.eats.2018.11.007. Meniscus Subluxation Retensioning: “Autotransplant”.
https://www.ncbi.nlm.nih.gov/pubmed/31016130
21 April 2019
Parkinsonism Relat Disord. 2019 Apr 11. pii: S1353-8020(19)30205-6. doi: 10.1016/j.parkreldis.2019.04.010. Combinatory microRNA serum signatures as classifiers of Parkinson’s disease. https://www.ncbi.nlm.nih.gov/pubmed/31003905
Proc Natl Acad Sci U S A. 2019 Apr 19. pii: 201818347. doi: 10.1073/pnas.1818347116. MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis. https://www.ncbi.nlm.nih.gov/pubmed/31004050
Cell Death Dis. 2019 Apr 18;10(5):337. doi: 10.1038/s41419-019-1567-4. Influenza a virus-triggered autophagy decreases the pluripotency of human-induced pluripotent stem cells. https://www.ncbi.nlm.nih.gov/pubmed/31000695
Chem Sci. 2019 Jan 10;10(9):2732-2742. doi: 10.1039/c8sc03394c. Ubiquitin binds the amyloid β peptide and interferes with its clearance pathways.
https://www.ncbi.nlm.nih.gov/pubmed/30996991
Cell. 2019 Apr 10. pii: S0092-8674(19)30267-3. doi: 10.1016/j.cell.2019.03.005. A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer. https://www.ncbi.nlm.nih.gov/pubmed/30982598
FEBS Open Bio. 2019 Mar 15;9(4):736-742. doi: 10.1002/2211-5463.12610. Proteomic pattern of breast milk discriminates obese mothers with infants of delayed weight gain from normal-weight mothers with infants of normal weight gain. https://www.ncbi.nlm.nih.gov/pubmed/30984547
J Proteome Res. 2019 May 3;18(5):2337-2345. doi: 10.1021/acs.jproteome.9b00023. Cost-Effective Automated Preparation of Serum Samples for Reproducible Quantitative Clinical Proteomics. https://www.ncbi.nlm.nih.gov/pubmed/30985128
Front Neurosci. 2019 Mar 29;13:301. doi: 10.3389/fnins.2019.00301. Proconvertase Furin Is Downregulated in Postural Orthostatic Tachycardia Syndrome. https://www.ncbi.nlm.nih.gov/pubmed/31001074
Proteomes. 2019 Apr 2;7(2). pii: E12. doi: 10.3390/proteomes7020012. Development of Targeted Mass Spectrometry-Based Approaches for Quantitation of Proteins Enriched in the Postsynaptic Density (PSD). https://www.ncbi.nlm.nih.gov/pubmed/30986977
BMC Cancer. 2019 Apr 18;19(1):365. doi: 10.1186/s12885-019-5547-y. Differential proteomic comparison of breast cancer secretome using a quantitative paired analysis workflow. https://www.ncbi.nlm.nih.gov/pubmed/30999875
Front Cell Infect Microbiol. 2019 Mar 28;9:65. doi: 10.3389/fcimb.2019.00065. A Two-Way Proteome Microarray Strategy to Identify Novel Mycobacterium tuberculosis-Human Interactors. https://www.ncbi.nlm.nih.gov/pubmed/30984625
Clin Proteomics. 2019 Apr 5;16:12. doi: 10.1186/s12014-019-9232-6. Identification of prothymosin alpha (PTMA) as a biomarker for esophageal squamous cell carcinoma (ESCC) by label-free quantitative proteomics and Quantitative Dot Blot (QDB). https://www.ncbi.nlm.nih.gov/pubmed/30988666
Nat Biomed Eng. 2019 Apr 15. doi: 10.1038/s41551-019-0387-2. A quantitative analysis of heterogeneities and hallmarks in acute myelogenous leukaemia. https://www.ncbi.nlm.nih.gov/pubmed/30988472
Clin Proteomics. 2019 Apr 6;16:13. doi: 10.1186/s12014-019-9234-4. Development of a glycoproteomic strategy to detect more aggressive prostate cancer using lectin-immunoassays for serum fucosylated PSA. https://www.ncbi.nlm.nih.gov/pubmed/30996714
Biomed Pharmacother. 2019 Jun;114:108856. doi: 10.1016/j.biopha.2019.108856. Identification of survival-related predictors in hepatocellular carcinoma through integrated genomic, transcriptomic, and proteomic analyses. https://www.ncbi.nlm.nih.gov/pubmed/30981109
EBioMedicine. 2019 Apr 11. pii: S2352-3964(19)30246-4. doi: 10.1016/j.ebiom.2019.04.012. APOA1 oxidation is associated to dysfunctional high-density lipoproteins in human abdominal aortic aneurysm. https://www.ncbi.nlm.nih.gov/pubmed/30982767
14 April 2019
Mol Pharm. Apr 18. doi: 10.1021/acs.molpharmaceut.9b00185. Identification of Tumor Specific Peptide as EpCAM Ligand and Its Potential Diagnostic and Therapeutic Clinical Application. https://www.ncbi.nlm.nih.gov/pubmed/30974945
Methods Mol Biol. 2019;1977:25-34. doi: 10.1007/978-1-4939-9232-4_3. Assessment of Ubiquitin Chain Topology by Targeted Mass Spectrometry.
https://www.ncbi.nlm.nih.gov/pubmed/30980320
Proteomics. Apr 11:e1900001. doi: 10.1002/pmic.201900001. Identification, Quantification and Systems Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets. https://www.ncbi.nlm.nih.gov/pubmed/30977292
Elife. 2019 Apr 8;8. pii: e41608. doi: 10.7554/eLife.41608. In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta. https://www.ncbi.nlm.nih.gov/pubmed/30958262
Proteome Sci. 2019 Mar 27;17:1. doi: 10.1186/s12953-019-0149-9. Hepatic protein carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro. https://www.ncbi.nlm.nih.gov/pubmed/30962768
Proc Natl Acad Sci U S A. 2019 Apr 8. pii: 201820417. doi: 10.1073/pnas.1820417116. Designer covalent heterobivalent inhibitors prevent IgE-dependent responses to peanut allergen. https://www.ncbi.nlm.nih.gov/pubmed/30962381
NPJ Precis Oncol. 2019 Apr 2;3:10. doi: 10.1038/s41698-019-0082-5. A plasma protein derived TGFβ signature is a prognostic indicator in triple negative breast cancer. https://www.ncbi.nlm.nih.gov/pubmed/30963111
7 April 2019
Rheumatology (Oxford). 2019 Mar 25. pii: kez085. doi: 10.1093/rheumatology/kez085. Global analysis of protein expression in muscle tissues of dermatomyositis/polymyosisits patients demonstrated an association between dysferlin and human leucocyte antigen A. https://www.ncbi.nlm.nih.gov/pubmed/30907425
JCI Insight. 2019 Mar 26;5. pii: 126337. doi: 10.1172/jci.insight.126337. Pro-inflammatory, IL-17 pathways dominate the architecture of the immunome in pediatric refractory epilepsy. https://www.ncbi.nlm.nih.gov/pubmed/30912766
J Allergy Clin Immunol. 2019 Mar 26. pii: S0091-6749(19)30410-5. doi: 10.1016/j.jaci.2019.03.012. Lentiviral gene therapy corrects platelet phenotype and function in Wiskott-Aldrich patients. https://www.ncbi.nlm.nih.gov/pubmed/30926529
J Immunother Cancer. 2019 Mar 29;7(1):91. doi: 10.1186/s40425-019-0569-1. Proteomic test for anti-PD-1 checkpoint blockade treatment of metastatic melanoma with and without BRAF mutations. https://www.ncbi.nlm.nih.gov/pubmed/30925943
Eur Arch Psychiatry Clin Neurosci. 2019 Apr 1. doi: 10.1007/s00406-019-01002-3. A proteomic signature associated to atypical antipsychotic response in schizophrenia patients: a pilot study. https://www.ncbi.nlm.nih.gov/pubmed/30937516
Oncogene. 2019 Apr 1. doi: 10.1038/s41388-019-0803-9. Tumor-associated macrophage-secreted 14-3-3ζ signals via AXL to promote pancreatic cancer chemoresistance. https://www.ncbi.nlm.nih.gov/pubmed/30936462
Andrologia. 2019 Apr 5:e13275. doi: 10.1111/and.13275.14-3-3 epsilon plays an important role in testicular germ cell apoptosis: A functional proteomic study of experimental varicocele. https://www.ncbi.nlm.nih.gov/pubmed/30950109
Chembiochem. 2019 Apr 3. doi: 10.1002/cbic.201900067. Crenolanib-derived Probes Suitable for Cell- and Tissue-based Protein Profiling and Single Cell Imaging. https://www.ncbi.nlm.nih.gov/pubmed/30942519
Front Pharmacol. 2019 Mar 18;10:253. doi: 10.3389/fphar.2019.00253. Deciphering the Pharmacological Mechanism of the Herb Radix Ophiopogonis in the Treatment of Nasopharyngeal Carcinoma by Integrating iTRAQ-Coupled 2-D LC-MS/MS Analysis and Network Investigation.
https://www.ncbi.nlm.nih.gov/pubmed/30936832
Sci Rep. 2019 Mar 27;9(1):5240. doi: 10.1038/s41598-019-41496-4. Prioritization of potential vaccine targets using comparative proteomics and designing of the chimeric multi-epitope vaccine against Pseudomonas aeruginosa.
https://www.ncbi.nlm.nih.gov/pubmed/30918289
Cover image details and credit: Freepik from www.flaticon.com is licensed by CC 3.0 BY
Cite as: N. R. Gough, Worth a closer look: April 2019. BioSerendipity (14 May 2019).
https://www.bioserendipity.com/worth-a-closer-look-april-2019/